Connor Morgan-Lang

Hi, thanks for reporting this issue. As you demonstrated, there might be a problem with the McrA reference package provided in `RefPkgs`. I tested it with some sequences and it...

You could either attach it to this thread by changing the extension from `.faa` to `.txt` and following these [instructions](https://docs.github.com/en/github/writing-on-github/working-with-advanced-formatting/attaching-files) (preferred), or by emailing me at [email protected].

I was unable to reproduce the issue with the file you sent. Can you please tell me the computer's operating system and amount of RAM? Please send me the following...

Thanks! Unfortunately, EPA-NG ran successfully with those files on my system. Could you send the output of `treesapp info`? I want to make sure we're using the same version of...

I'm still not able to reproduce the error with the exact same software versions. Could you please send me the McrA reference package that is causing EPA-NG to fail? I'll...

In order for the alignments to work the full-length nucleotide ORFs should be written to the output directory as well. Sequences should be separated into FASTA files based on the...

ClipKit parameters and settings have been benchmarked using `treesapp evaluate`. The following code is used to calculate a single error value for the classifications across all taxonomic ranks, weighted by...

Alright, this isn't exactly true as `-m PROTGAMMAAUTO` is used when inferring a phylogeny from amino acid sequences with RAxML but it would be ideal to have a single tool...

This feature should be written to report summaries data at multiple scales - from SAGs and MAGs all the way to metagenomes. When profiling SAGs and MAGs - this should...