Cécile Monat

Not sure how to use genomic context option

8

Hello, I'm confused because of the following sentence in the documentation part Genomic context: >From version 1.2.45, it is possible to search genomic context in a pangenome graph using PPanGGOLiN....

Trying to generate the projection directory without succes

3

Hello, i'm using PPanGGOLiN v2.2.3 and I would like to produce a projection folder as in v1. I've tryied the following command: ````bash ppanggolin projection -p pangenome.h5 --fasta ../Bacillus_A_ombysepticus_ICSA_fasta_29072025_modified.list --anno...

KMC stay silent when output file is not created due to memory problem

1

FYI: KMC stays silent when the output file is not created due to a memory problem. In my case, I'm running KMC3 on a SLURM cluster, and my log files...