cljacobs issues

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                                            cljacobs

Cannot compile with newer versions of C++ standard

I had trouble compiling the latest release version of this software (v1.2.2_p1) using the default C++ standard for my compiler (GNU gcc 7.1.0). There were a number of errors, although...

`write_delim` clearing (non-empty) files with `append = TRUE`

As per the title, the `write_delim` function will delete all the previous contents of a file, even if `append = TRUE` if provided an empty data.frame (tibble, etc) as the...

Incorrect examples for intersect "-c/-C" (counting overlaps) with multiple query DBs

Very minor issue. The current [online documentation for `bedtools intersect`](https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html) appears to be incorrectly formatted for the counting options: `-c` and `-C` when demonstrated with multiple database files. The second...