clarepacini

Hi, Thanks for the scripts, they have been very useful so far! I have one (possibly silly) question. I am running the following script: #!/bin/bash while true; do rm -rf...

Access to vcf file

1

Hi, Is it possible to get a link to the vcf file: wget ftp://hengli-data:[email protected]/hapdip/vcf-flt/CHM1.mem.hc.flt.vcf.gz At the moment I have a login incorrect error. Thanks! Clare

Not outputting methylation calls

2

Hi, I have run signalAlign from source and also using the docker option. However, it is only creating the tempFiles_alignment directory. I have checked that bwa is installed in the...

install issue import motif

1

Hi, I'm trying to install signalAlign but get the following error on testing: #cd .//bin && ./signalAlignLibTests cd .//bin && ./testSignalAlign Traceback (most recent call last): File "./testSignalAlign", line 12,...

IPD mean values

3

Hi, I am trying to assign base modifications on a per read basis. I can extract the raw IPD data for each read from the bam file. However, I do...