cjpeterein

[BUG] Inconsistent Behavior Between CLI and VS Code Extension with Enterprise MCP Configuration

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### Preflight Checklist - [x] I have searched [existing issues](https://github.com/anthropics/claude-code/issues?q=is%3Aissue%20state%3Aopen%20label%3Abug) and this hasn't been reported yet - [x] This is a single bug report (please file separate reports for different...

[BUG] Freshly installed Claude Code ignores settings.json

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### Preflight Checklist - [x] I have searched [existing issues](https://github.com/anthropics/claude-code/issues?q=is%3Aissue%20state%3Aopen%20label%3Abug) and this hasn't been reported yet - [x] This is a single bug report (please file separate reports for different...

## Summary This PR fixes configuration priority handling throughout the codebase, ensuring environment variables properly override file-based settings and defaults. It also includes fixes for test pollution and build-time version...

Fixes process leak and environment variable correctness

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## Summary This PR addresses multiple issues related to Claude SDK subprocess management and test reliability: - **Subprocess leak prevention**: Fixed orphaned Haiku/SDK agent processes accumulating when the worker crashes,...

fix: prevent SDK subprocess accumulation and improve process lifecycle management

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## Summary - **Prevent SDK subprocess leaks**: The Claude SDK spawns subprocesses via `query()` that stay alive after the async iterator exhausts. Added AbortController cleanup with try/finally wrapper to guarantee...

fix: respect environment variables with correct priority Added applyEnvOverrides() method to SettingsDefaultsManager that ensures environment variables take highest priority over file and default settings. This enables runtime configuration overrides without...