Cindy Wen

REF==ALT for variants with ALT as major

2

Hi! Thanks for building the tool. I used crossmap to liftover VCF from hg38 to hg19. Some variants in the original VCF has REF as minor allele, ALT as major...

sQTL annotation with leafviz

1

Hi! I'm using leafcutter and FastQTL for sQTL mapping and I generated annotation files with gencode.annotation.gtf and leafviz. I'd like to annotate the significant sQTL/introns I identified. Correct me if...