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                                            cihankayacihan

ParseDCD: Unrecognized DCD format

I tried to reproduce this error but I am failed. Can you share a link of your dcd if it is still available?

Segmentation fault on ANM calculations on large systems, despite of tones of avaliable RAM

Lapack is dealing with those over scipy. I guess it will be due to diagonalizer. Currently, we have an effort to build gpu based eigenvalue decomposition for large molecules with...

Projection plot

Currently, it is not available in VMD but you can use prody from command line or terminal and get the projection plots using matplotlib.

NMA with EM-data using pseudoatoms

We will add a parser for EM map standard format.

support for CONECT in parsePDB and writePDB

Thanks for your input. Can you send this over [email protected] so that we can discuss more and find a better way to implement this. Thanks.