Cihan Erkut
Cihan Erkut
Sorry I couldn't follow. Which GPUs are affected now?
I tried that actually but the web app couldn't run GSVA because it required more memory, I guess, I'm not sure. Normally I run GSVA using `BPPARAM = BiocParallel::MulticoreParam(workers =...
Around 50,000 genes x 4,000 samples as the expression data, and 20,000 gene sets.
Not sparse at all. We already prefilter the data to remove genes with constant or no expression, so there *is* a TPM value for each gene in each sample.
Dear @rcastelo , thanks a lot for your great support. I look forward to trying it :)
Hi @susie-ont, Thanks for your quick response. I would like to use Salmon, for example. Please check the note "Read / alignment order" in the manual: https://salmon.readthedocs.io/en/latest/salmon.html#using-salmon An alternative solution...