Chunyu Ma

Results 121 comments of Chunyu Ma

Hi @dkoslicki, I think you are able to extract this information from [this](https://go.drugbank.com/releases/latest) downloadable XML file, which needs the license to download.

Sounds great! Happy to see this will be useful. One difficult thing I saw using this information is the mapping between this text and the node in KG2, and there...

Hi @ecwood, I agree, to convert this information into edges, we need to first resolve the mapping issue. The second issue we may need to address is extracting the correct...

Hi @saramsey, thanks for opening this issue and paying attention to it. Except for `biolink:treats`, do we also have to check if other predicates also have this similar problem where...

Hi @edeutsch and @saramsey, I think both solutions (1. use filtered KG to train xDTD; 2. add a filter to the xDTD outputs) work for this issue. However, I will...

Sure, I can add a filter to the xDTD output. Can I know where I can find the edge attribute `domain_range_exclusion`? I can't find it in the `edges_c.tsv` file of...

Thanks @amykglen! I will check it again.

Hi team, I have already updated the xDTD database for KG2.8.4 to exclude all edges with `domain_range_exclusion==True`. It should now solve this issue. I tested `test_ARAX_infer.py` but got an error...

Thanks @amykglen. Now the updated xDTD database has passed the `Infer` tests. I think we can verify this solution for this issue after deployment.

Hi @edeutsch, @amykglen or @dkoslicki, could you please help me take a look at two places ([here](https://github.com/RTXteam/RTX/blob/c1d25d8cf745a4a1ba4499669e20fe829f32cee8/code/ARAX/ARAXQuery/Infer/scripts/infer_utilities.py#L178-L181) and [here](https://github.com/RTXteam/RTX/blob/c1d25d8cf745a4a1ba4499669e20fe829f32cee8/code/ARAX/ARAXQuery/Infer/scripts/infer_utilities.py#L218-L220)) in "infer_utilities.py". I found that previously @dkoslicki wrote these code and...