chulghim

humann2_config doesn't work! help me.

6

/mnt/mone/Apps/bdcm/python/dynm/v3.6.5/bin//humann2_config --update run_modes threads 20 Unable to write to the HUMAnN2 config file. how can i change it?

demo.fastaq file good works. but, I doesn't get the result from demo.sam file. I used the following command : humann -i demo.sam -o test2 --threads 40 see the demo_genefamilies.tsv file...

ERROR :parallel not detected.

3

run command: (pip-tensorflow) (DeepMicrobes) [xxxx@compute40 DeepMicrobes]$ tfrec_predict_kmer.sh -f ../test/SRR5935743_clean_1.fastq -r ../test/SRR5935743_clean_2.fastq -t fastq -v ../vocab/tokens_merged_12mers.txt -o srr -s 4000000 -k 12 return : ERROR : parallel not detected Help me.

Mixed race's genetic map file?

1

1.In case of mixed race,  how can make genetic_map file?   2. It seems that HRC panel was used in this paper, I wonder that  HRC panel vs 1kpg3 panel's  imputation...

Hello, I have some question?

2

My name is namcheol kim. I am going to do a LPS imputation test based on 1kgp3 panel. My input : sample1_R1.fastq.gz sample2_R2.fastq.gz Panel : 1kgp3 panel I read this...

What is minRatio option?

1

I got this message: Chunk 3 has less than 0.1% of variants from the GWAS panel overlapping with the reference panel ... Please increase the value of "--chunkSize" to analyze...