Christopher Hughes

issue downloading pre-built assets

6

Hi, I am having an issue with refgenie pull. This is a fresh install of refgenie on a server running CentOS7. Basically what happens is that if I try to...

Java error in version 2.0.0

25

Hi, I am seeing an error in PeptideShaker 2.0.0. ``` Sat Nov 07 14:05:13 PST 2020 PeptideShaker process completed. Sat Nov 07 14:05:13 PST 2020 Processing Completed. WARNING: An illegal...

Linux?

6

Hi, Thank you for releasing this great tool! I am wondering if you have any plans to transition it to Linux using Mono and the ThermoRawFileParser library? Just the open...

Masses wrong for TMT 10plex

2

Hi, In pFind Studio 3.1.3, if you choose MS2 quantitation, the reporter ion masses are wrong for the built in TMT 10-plex option. Cheers, Chris

Error with quantification flags

1

**Describe the bug** Processing some data files for quantification with TMT. If I use the flags -quxmR -r TMT11, it will throw an error that -q and -r are mutually...

Question about label data

4

I am trying to search some SILAC data, which I have done before without issue, but I am having some problems now. In contrast to when I have done this...