Christopher Gulvik
Christopher Gulvik
You implemented two adapter removal processes (by overlap analysis and by adapter sequence), so thank you for all your efforts! I don't know of another read filtering package that reports...
I specified 32 CPUs with `-j 32` but it looks like `any2fasta` calls were done sequentially. Would you consider parallelizing that step or making an option to skip it? For...
Sometimes I have just 1 new isolate I'd like to compare against a larger parsnp run of a couple thousand genomes. Re-running from scratch can take 2+ days to analyze....
How do I constrain the Y-axis for stat_coverage? Specifying `ylim=(0,150)` and `ymax=150` doesn't work in aes() and prints "Error: subscript contains invalid names" but works without that part. Because coverage...
To enable further follow-up work on the exact files used for comparison, for example for the genomes using ANI, could a feature be added to specify an outpath where the...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
Hello, I see you have images stored on the FTP ncbi server [here](https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/FCS/releases/latest/), but would you please consider adding the Dockerfile for FCS-adaptor ? I'm interested in a GNU (e.g.,...