Christian Arnold

You should increase the time to at least 30 seconds on shared and cluster file systems, 5 seconds is simply not enough. Does this solve your issue?

I am pretty sure this is intentional and not a bug per se. A deliberate design decision, allowing indexing of the list both via a numeric index as well as...

A fair point, maybe @johanneskoester can chip in here whether this was deliberate and if so, what is the advantage of it. I do see your point with the redundancy,...

In essence: For debugging purposes, multiple times I needed to change the snakemake object for testing stuff but could not. You can just iterate it over via the names, I...

No, that was indeed all, therefore so hard to debug. I always post the full error message... it turned out the reason was a missing closing parenthesis in one of...

I agree, if an absolute path is specified, it should work, I didnt try by myself yet. If one specifies a "global" profile that is shared across projects, specifying an...

Thanks for the post Johannes, this helps. One additional question: Say I modify a rule and want to cleanup the metadata for multiple files, either say the output file for...

So you are not using the conda directive, but the error is thrown nevertheless even though conda is not activated? This sounds too much for a major version release, more...

I am running into the same issue. Can someone comment on how kallisto treats "N" as part of the barcode? In my case, I have "N" either in the first...

The issue is caused by the first plot: It contains the following line when constructing that reproducibly causes the error: ` facet_wrap(~ class + r_positive, labeller = labeller(class=freq_class, r_positive =...