Chaz Reid

Results 8 comments of Chaz Reid

Still seeing this warning with Sphinx 2.4.1: ``` $ make html Running Sphinx v2.4.1 /Users/charles/codes/dbio/kharon/vp/lib/python3.6/site-packages/m2r.py:652: RemovedInSphinx30Warning: app.add_source_parser() does not support suffix argument. Use app.add_source_suffix() instead. app.add_source_parser('.md', M2RParser) ... ```

#530 also related. Are you including the `log_transformed=True` kwarg in your call to `rank_genes_groups()`?

In #706 @LuckyMD gives a minimal working example in [this comment](https://github.com/theislab/scanpy/issues/706#issuecomment-505335006) that may give you a useful starting point. Their advice to create/post a way to reproduce the error is...

@amarjandu adding the enums caused mypy errors, did my best to fix in #2500 but was not able to resolve new errors: ``` ====================================================================== ERROR: test_notify_or_queue (__main__.TestNotifyV2) [Should queue when...

Looks like this is related to the problem of empty subscriptions breaking notifier code (since empty subscriptions have no "body" field): https://humancellatlas.slack.com/archives/GLVNE7UAH/p1571246888007700 Do you have a no-body subscription in your...

Few thoughts: * Related ticket on elasticsearch binary/client to use for local testing on Mac: https://github.com/HumanCellAtlas/data-store/issues/2459 * This question seems to be Ubuntu-specific (asking which aptitude package to install). (@DailyDreaming...

ugh codecov is teh wuuuurst

humancellatlas/data-store license is MIT ([link](https://github.com/HumanCellAtlas/data-store/blob/master/LICENSE))