Christophe Klopp
Christophe Klopp
Hi, Could you provide us with information about how long and what memory and disk space the assembly for model species such as E coli, yeast, fruit fly and human...
When I extract the contig length and coverage from the p_ctg gfa file and plot them. A small portion of the contigs are long (Mb or larger) and have the...
I would like draw the assembly graph after having removed the alternative haplotype (extracted using purge_dups) from an assembly graph gfa file. Could you add a feature to gfatools blacklist...
Hi, Is there a way to extract Hi-C link counts (per bin) using coordinate intervals and the .hic file?
After launching a batch we can follow its progress with the log page. It would be nice to know which query and reference each line corresponds to.
It would be nice to have a selector in the user interface to automatically add swapped chromosome background colors such as in https://www.biorxiv.org/content/10.1101/2022.03.31.486393v1.full.pdf Fig 3.
Improving the adjustment of the chromosomes name to the display space. Modify the way of display the name on zoom.
In order to simplify dgenies usage it would by interesting to be able to give a tabulated file with the URL of the different genomes to compare and be able...
Add the possibility to upload query and target bed files to plot elements on the border of the dot plot such as repeat or gene content or specific locations of...
When I run gff3_merge I get the following error Traceback (most recent call last): File "/tools/python/3.6.3/bin/gff3_merge", line 8, in sys.exit(script_main()) File "/tools/python/3.6.3/lib/python3.6/site-packages/gff3tool/bin/gff3_merge.py", line 229, in script_main main(args.gff_file1, args.gff_file2, args.fasta, report_fh,...