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                                            chkcole

problem running vdjer on bam file from GTEx

could you provide a link to the location of the hg38 genome you used? I encountered a similar error when using vdjer: ELAPSED_SECS START 0 0 PROC_STATUS START Name: vdjer...

problem running vdjer on bam file from GTEx

The result I get from running `samtools view -H /afs/cats.ucsc.edu/users/q/chkcole/TEST_RNASEQ/Cd27Cd38_Plate1_A10_S472_L008/1/Aligned.sortedByCoord.out.bam` is @HD VN:1.4 SO:coordinate @SQ SN:1 LN:248956422 @SQ SN:10 LN:133797422 @SQ SN:11 LN:135086622 @SQ SN:12 LN:133275309 @SQ SN:13 LN:114364328 @SQ...