Charlton Callender

icon indicating an email [email protected]

icon location Tokyo icon location Consultant WHO. Formerly @blab @ihmeuw-demographics

Results 4 comments of Charlton Callender

Pull genbank files with Accession numbers

So the NCBI and BioPython don't actually let you pull genbank files via accession numbers. Issue was started on the BioPython page to track changes for this. https://github.com/biopython/biopython/issues/926

Pull genbank files with Accession numbers

@pkundert I'd recommend asking on the BioPython page. I haven't hear anything yet. https://github.com/biopython/biopython/issues/926

Pull genbank files with Accession numbers

@sidneymbell Hey Sidney, I can try helping with this later. Do you know if running update on `test_vdb` is also failing? `python vdb/zika_update.py -db test_vdb -v zika`. I feel like...

Pull genbank files with Accession numbers

@trvrb `--update_citations` stopped working? It seems like biopython 1.68 was released in August 2016 (http://biopython.org/wiki/Download) so I don't think the underlying problem is fixed. I wonder why it wasn't working....