Charles Greenberg
Charles Greenberg
Using continuous variables. Took a simple input matrix X and target variable y. It seems to run in a problem using sklearn's preprocessing even though the matrix dimensions are correctly...
Currently the only way to get ALL leaves of all representations is a bit clunky, you have to use selection: ``` python selB = IMP.atom.Selection(hsel,resolution=IMP.atom.ALL_RESOLUTIONS, representation_type=IMP.atom.BALLS) selD = IMP.atom.Selection(hsel,resolution=IMP.atom.ALL_RESOLUTIONS, representation_type=IMP.atom.DENSITIES)...
Currently the base type is assumed to be IMP.atom.BALLS, but that shouldn't be required. Maybe we want to represent a fragment with only density. Also, any objections if I just...
Primarily so we can easily select things when the whole system is properly tagged with StructureSource. Type ideas (I'm open to better names) IMP.atom.XRAY, IMP.atom.MODEL, IMP.atom.EM, and something to represent...
A common operation in PMI is gathering frames from many RMF files and writing them to a summary RMF file. Currently this can only be done on a single CPU...
The value of a (diagonal) 3D gaussian at some voxel is the product of the x,y, and z 1D gaussians. That means for an NxNxN grid, you don't have to...
Currently if you create a SampledDensityMap it treats all Gaussians as point particles and just uses whatever kernel was requested. I will add a CoreGaussianKernel which directly uses the covariance...
There doesn't appear to be any documentation explaining what a PairScore (or TripletScore etc), why you would use it, and under what situations, which solution could be faster.
It would be useful to be able to optionally require hierarchies to have the same (IMP) structure. E.g., you might create 10 copies of a protein, but you want make...