Joseph Lee comments

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                                            Joseph Lee

call-methylation returns non-CG methylated site?

Thanks for the reply. The first base should be `[0,1]` in zero-based format, right? ([ref](https://www.biostars.org/p/84686/)) As the second example, the same sites are ``` bisulfite.ENCFF835NTC.example.tsv chr20 5005939 5005940 . 12...

call-methylation returns non-CG methylated site?

Thank you, this will be really helpful.

分段推文建議

剛發現當分段後最後一個字元是符號的話 (e.g. ～)，推文會送不出去

Run result through `number_format` to get thousand separators

The decimal places are gone. And is it possible to imply inputing numbers with delimiters?

Update e4QuerySend.php

It bothers me for couple days and finally solved!

Fix for discontinued Google API

I found this url https://finance.google.com/bctzjpnsun/converter and it works.

Hack for values with leading 0

@Naereen Try this! https://github.com/cgjosephlee/increment_decrement

Hack for values with leading 0

VSCode is a good editor, too!

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

Had same problem here on Crispa example. I installed using docker. ``` $ lorean.py -a -rp repeats.scaffold3.bed -sr scaffold3.short_1.fastq,scaffold3.short_2.fastq -lr scaffold3.long.fasta -pr scaffold3.prot.fasta -sp crispa scaffold3.fasta -d -f -mg -t...

raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

``` $ tail gmap_output/gmap_map.log Checking compiler options for SSE4.2: 6B8B4567 __builtin_clz=1 __builtin_ctz=0 _mm_popcnt_u32=17 __builtin_popcount=17 Finished checking compiler assumptions Looking for index files in directory /mnt/nas1/hhl/test/cDNA/lorean/LoReAn_Example/Crispa/LoReAn_annotation/run//gmap_output//scaffold3.fasta.masked.fasta.rename.fasta_GMAPindex Pointers file is scaffold3.fasta.masked.fasta.rename.fasta_GMAPindex.ref153offsets64meta Offsets...