Lasse Ebdrup Pedersen

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Hi, It appears that the areas of the voronoi cells do not correspond to the $AREA set in ones network. The same network using the regular treemap algorithm in JIT...

Currently relaxed phylip parsing only accepts a space as the id/sequence split but Tab is also allowed as a separator in relaxed phylip files

The readme stated that setting threads to less than 1 would make it use all threads. I just got an error that threads needs to be at least 1

medaka has a different syntax that the current snakefile expects

Updated the python version in environment.yml to allow install of newer medaka versions.

Hi, rule polish_clusters has 2 inputs (I1 and I2) but only use 1 (I2). Should I1 be used?

umi_sats.py is maybe useful, but a bit unfinished and unmentioned. Its only used in the Makefile, which is also never mentioned nor used. Should it be named umi_stats.py? The command...