celinescornavacca
celinescornavacca
other suggestion: take a network with one reticulation and inheritance probs of around 0.5 for each of the reticulated branches and generate a MSA of length 1000, 2000 etc and...
Yep, it is an additional one, if it was not clear
Can you post here your definition of BIC you use here? BIC = -2 lnL + k ln n what are k and n in here? (We discussed it in...
I think that there is something strange here. As I wrote once in the slack, the diff of BIC between a tree and a network is the following: diff BIC...
> Just look at the loglikelihood values! The inferred 0-reticulation network has a better loglikelihood than the "true" 1-reticulation network! This can be due to the inheritance probabilities, as I...
But not their number of parameters On December 1, 2020 3:27:42 PM GMT+01:00, Sarah Lutteropp wrote: >I have created a GitHub issue for the MSA discussion: >https://github.com/lutteropp/NetRAX/issues/21 >And here is...
Thanks a lot for the draft. Sections 6.1, 6.2, 8.2, 8.3 in my option still need some work for the reader to follow all the details of your hard work....
Here are my answers: > I wrote: The probability P(T|N) of a displayed tree T in a phylogenetic network N is the product of the probabilities of the hybridization edges...
Thanks! Internet was down for 48h! Can you send me the overleaf link here? I lost it in Slack :(
Thanks for the links, I am in the countryside and someone cut a cable while doing some construction work. I will have a look but I will wait for the...