Ezequiel Martin

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icon company University of Cambridge icon location Cambridge

Results 6 comments of Ezequiel Martin

Error: RangedData objects are deprecated and the coercion method from data.fram or DataTable to RangedData is now defunct.

Hi, was this resolved? because I have been getting this for some time now (have cloned got repo today, have reinstalled with both methods recommended again and nothing will do)...

Error: RangedData objects are deprecated and the coercion method from data.fram or DataTable to RangedData is now defunct.

Hi :) thanks for the quick answer. My command would look like: Rscript /home/cebercoto/Downloads/ichorCNA/scripts/runIchorCNA.R --id ${SAMPLE} --WIG ${TUMOUR}_${REFERENCE}.wig --NORMWIG ${NORMAL}_${REFERENCE}.wig --ploidy "c(2,3)" --normal "c(0.5,0.6,0.7,0.8,0.9)" --maxCN 5 --gcWig /home/cebercoto/Downloads/ichorCNA/inst/extdata/gc_hg38_1000kb.wig --mapWig /home/cebercoto/Downloads/ichorCNA/inst/extdata/map_hg38_1000kb.wig...

Error: RangedData objects are deprecated and the coercion method from data.fram or DataTable to RangedData is now defunct.

Hi @gavinha thanks for pointing that out. All my pipelines are set up in hg38, so I will be making my own PON on 38 then (have enough data) and...

Error: RangedData objects are deprecated and the coercion method from data.fram or DataTable to RangedData is now defunct.

Hi @gavinha, sorry it took me so long to get back into this, but I finally had time to process our cohorts and it's working brilliantly now for sWGS, WES...

rdpclassifiertraindata download timeouts and breaks the build

Same problem here as of 14/05/2024

RDP traindata not found

Same problem here as of 14/05/2024