ceanothus

How to provide paired end short reads to RagTag correct?

1

Hi there, How do I format the RagTag correct command to receive paired end short reads for validation? Would it be like: > ragtag.py reference query -R forward_reads.fasta -T sr...

Gene products labeled as "hypothetical proteins" even though intermediate files have product names

6

Hi there, I am using funannotate v.1.8.11 with conda. I have a set of gene models for a draft fungal genome that I received from BRAKER2 and refined with PASA;...

Is there a way to run funannotate update on existing output?

3

I am using funannotate v1.8.11. I left the update command running for 4 days and it did not finish before allotted time ran out, taking much longer than expected (I...