cbrunoels

I'm having the same issue. I had a GRCh37 referenced BAM file of a WES sample that I converted to hg38 using [CrossMap](http://crossmap.sourceforge.net/). I tried running the hg38 sorted BAM...

Thanks @abhisheknrl. Unfortunately I already have sambamba up and running so this didn't help. For clarification I was able to run the ``get-reads-alt-unmap.sh`` script successfully, but when I try to...