Calum Walsh comments

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                                            Calum Walsh

Reference data necessary for Braken.

It would be great if you could also make this available for the NCBI_r88_Human17k database please!

Advice on handling memory errors

Thanks very much Matt. I'll try the taxonomic splitting first and then reducing the primary chunk size if that fails. I wasn't aware of the tertiary clustering option (my attention...

Advice on handling memory errors

@MrOlm sorry to resurrect this closed issue. I want to run tertiary clustering on a dataset that has already been dereplicated using multiround primary clustering - can I just rerun...

Enter the pipeline at step 3 (detect and remove chimeric reads)

Hi @sguizard Just checking in to see whether you were able to implement this? It would be a very handy feature. Thanks, Calum

Computing Contig Length Error

Thanks @anuradhawick That fixed the issue I was having and the software appears to have run successfully. I assume the second column in the bins.txt file contains the (zero-based) binIDs...

Computing Contig Length Error

Thanks @anuradhawick There are a few contigs omitted from the output (present in the multifasta input but not in the `bins.txt` output). Is that to be expected?

Computing Contig Length Error

That makes perfect sense to me. I assumed they were unbinned/undetermined and would have expected this but just wanted to confirm. Thanks