MartinKapun

Error plotting with SquigglePlot.py

8

Hi, unfortunately, I cannot get SquiggleKit to work. I closely followed your Installation tutorial and installed the required packages in a virtual environment. ``` cd /opt/bioinformatics git clone https://github.com/Psy-Fer/SquiggleKit.git python3...

Suggestion: Include MASK files for correct calculation of per-site averages

3

Hi Lucas, me again! I have another suggestion that may be useful as you are restructuring your code right now. One common problem with PoPoolation is, that it does not...

masking when averaging by window-length

3

Hi Lucas, thanks for the great new features -praticulary the averaging options are very useful. However, I am wondering if you could also implement the possibility to mask when in...

Hi all, apologies for yet another request! Specifically, I want to simulate amplicon-seq reads of ONT data using NanoSim but fail at the simulation step which does not finish (at...