calizilla

Hi Torsten, My snippy analysis progresses well creating the expected output files using $sample as prefix, but errors when the BCFtools 'consensus' command is run, as the read group specified...

Replace scratch pathname with just nci-parallel

URL update needed for the latest MEROPs database file

5

**Are you using the latest release?** v 1.8.17 **Describe the bug** Funannotate pulls down this MEROPs db file which has 5009 genes and was last updated in 2019: https://ftp.ebi.ac.uk/pub/databases/merops/current_release/merops_scan.lib The...

Issues with multiple transcripts: MEROPs, BUSCO, PFAM and dbCAN/CAZyme annotations missing for T2 transcripts from final annotation file

1

All transcripts in the final anotation.txt file produced by funannotate 'annotate' have been converted to T1 transcripts, where the input files have both T1 and T2. In other final output...

CSV counts upload automatic condition and replicate detection

1

It would be great to automate detection of the 'Condition name' and 'Replicates' if the uploaded CSV is formatted according to a certain specification eg " as per the example...

**Describe the bug** The link to NCI Gadi config from [this page](https://nf-co.re/configs/nci_gadi/) is 404 not found. **To Reproduce** Steps to reproduce the behavior: 1. Go to https://nf-co.re/configs/nci_gadi/ 2. Click on...