Carlos Alberto Espinosa Méndez

To what fields does the info from the INFO field SOMATIC on a VCF translate to on a MAF file (I believe the SOMATIC column in MAF does not actually...

API search endpoint has bad default argument for levels on swagger page

3

Hi, I don't know where else to reach out to, but hopefully this is the right place. Today I started getting 404s on queries that used to work with no...

[BUG] Study Access Authorization not working with SAML

1

**Describe the bug** When authorizing with SAML on the latest version, the portal authenticates but the access to private studies doesn't work. **To Reproduce** Deploy cbioportal with SAML authentication. Load...

[BUG] Missing dependencies JitPack for Basically Most Versions of cbioportal

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**Describe the bug** Whenever following the deployment instructions in the documentation for versions 5 and prior of cbioportal **To Reproduce** Download repo Set to any of the versions 5 and...

[BUG] SAML SP Metadata endpoint not working

4

**Describe the bug** Cannot get the SAML SP metadata on version 6.X+ **To Reproduce** Go to http://localhost:8080/saml/metadata (or https:///saml/metadata) See [https://docs.cbioportal.org/deployment/authorization-and-authentication/authenticating-users-via-saml/#obtaining-the-service-provider-meta-data-file](official documentation) **Expected behavior** An xml of the SP metadata...