Paolo Cozzi

Hi, here are other animals I found over the net.

Dear @mfranberg , I found some time to try to change how your library read chromosomes in order to support string chromosome. I've changed code and tests accordingly and seems...

Add support for extra-chroms (string chromosomes)

1

Dear all, I don't know if it possible or easy to implement at the current state of art of this library: will be possible to add support for the plink...

Dealing with symlink pointing to directories (fix #11)

2

Now shell-safe-rm will consider a symlink to a directory like a regular file; Added indentation in `directory` condition

`shell-safe-rm` can't deal with symbolic links pointing to directories, for example: ``` $ export SAFE_RM_DEBUG=1 $ cd /tmp/ $ mkdir test $ ln -s test test_link $ rm test_link [D]...

Dear Aaron, here some minor fixes to your library: - I've changed `self.metadata`, `self.infos`, `self.filters`, `self.formats` in `Reader` class from dictionaries to `collections.OrderedDict`: By using `Writer` class, those records will...

vcfwave and gVCF question

1

dear developers, I'm interested in applying `vcfwave` after a [freebayes](https://github.com/freebayes/freebayes) call. In particular, I would like to apply it on [gVCF](https://support.illumina.com/help/BaseSpace_App_TumorNormal_help/Content/Vault/Informatics/Sequencing_Analysis/BS/swSEQ_mBS_gVCF.htm) data created with `freebayes`. I have a question for...

### New issue checks - [x] I did not find an [existing feature request](https://github.com/nanoporetech/dorado/issues?q=is%3Aissue%20type%3AFeature). ### Dorado subcommand Aligner ### Feature request Dear all, I find an issue when doing dorado...