Benjamin Skubi
Benjamin Skubi
I was having a similar issue: > higlass-manage view demo.contact_matrix.cool > Pulling latest image... > done > Data directory: /home/benjamin/hg-data > Temp directory: () > Starting... default 8989 > Docker...
I ran into this as well while validating a pipeline with some test data. It seems to occur when the `.pairs` files input to the `merge` command have been merged...
Same issue on Windows. The problem generating this specific error is that one of higlass-manage's dependencies, pybbi, relies on the os.uname method which is only available on certain flavors of...
@jouvrard05 I didn't, unfortunately. I can use HiGlass on my linux desktop and static images can be created using the cooltools library so that's what I'm resorting to for now.
@jouvrard05 I tried a few things (dockerizing higlass-manage, using WSL) but the only thing that worked was straight-up dual booting linux (Ubuntu) and running higlass-manage that way. Fortunately it works...
That's correct, I wasn't using def inside of the function. That explanation makes sense. Thank you!
I have the same issue.
Hi, I'm aware of this. It would be easy to avoid causing these issues arising for users of the method in the first place by adding a simple check to...
The major issue in the current design as I see it is actually with the bins argument, not the pixels argument. The pixels argument already allows passing an iterator that...
Yes, I can try that, thanks for the tip. Also, I'm running on SLURM. I let the chr1_chr2 condition run for > 30 minutes, which has a status of RUNNING...