brovolia

Ontology for simplifyGOFromMultipleLists

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Hi jokergoo, thank you for the awesome package! I have an issue with `simplifyGOFromMultipleLists()` It looks like it doesn't work with `ont` argument. Please, take a look on output below...

using spatialdata object input, dynamic segmentation mask detection (cytosol/nucleus), and integrated test case using nf-test and Xenium test data.

#Summary This PR introduces the Points2Regions module for spatial clustering and visualization of transcript data. It includes: - POINTS2REGIONS_CLUSTER: performs clustering using the Points2Regions model. - POINTS2REGIONS_PLOT: visualizes the spatial...

### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...

ampliseq samplesheet

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## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...

test_longreadonly

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## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...

### Description of the bug The pipeline consistently fails at the Prokka step, e.g.: ERROR ~ Error executing process > 'NFCORE_MAG:MAG:PROKKA (MEGAHIT-MetaBAT2-test_minigut_sample2.unbinned.2)' Caused by: Process `NFCORE_MAG:MAG:PROKKA (...)` terminated with an...

## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...