Brian Raymor

The [README](https://github.com/CLO-ontology/CLO/#readme) states: The website for CLO ontology is here: https://obofoundry.org/ontology/oae.html but that's an ontology for adverse events. Is the correct website: https://obofoundry.org/ontology/clo.html

census schema should document the logic for the tissue_general mapping

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On [**cell-science-platform**](https://czi-sci.slack.com/archives/C06AVGFV222/p1709168548918829?thread_ts=1709164178.527349&cid=C06AVGFV222), @bkmartinjr wrote: _The issue is that any given Census requires the following to be built:_ _- a CxG schema (which implies ontology versions)_ _- a specific mapping for...

- [x] Correct spelling for "Accesing" on https://chanzuckerberg.github.io/cellxgene-census/examples.html#new-accesing-spatial-transcriptomics-data-with-census (https://github.com/chanzuckerberg/cellxgene-census/pull/1369) - [x] Get review on/ merge builder changes [#1245](https://github.com/chanzuckerberg/cellxgene-census/pull/1245) - [x] Merge schema doc updates https://github.com/chanzuckerberg/cellxgene-census/pull/1356 - [ ] API updates...

# Context See [[NTR] Version specific Visium assays](https://github.com/EBISPOT/efo/issues/2178). The dataset schema has been updated to require a descendant of "EFO:0010961" for Visium Spatial Gene Expression which includes: * EFO:0022857 for...

Add support for lists in obs

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### Please describe your wishes and possible alternatives to achieve the desired result. There are two cases in CELLxGENE Discover that permit multiple values to be annotated in `obs` metadata...

Echoing the earlier question from @cmungall in #60 ... 1. There appears to be no tagged releases on a regular cadence. 2. The last issue was closed in 2022. There...

Per https://github.com/chanzuckerberg/cellxgene-census/pull/1439#issue-3599005885: > This is a minimal diff to drop the duplicate rows from the `census["census_info"]["organisms"]` table arising from the builder's distinct spatial & non-spatial ExperimentSpecs for human and mouse....

Update assay lists in globals.py

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Before census builder consumes schema 7.0.0 datasets (still pending migration completion): - [ ] Update [RNA_SEQ](https://github.com/chanzuckerberg/cellxgene-census/blob/3f50ba43fa6dcac6e4af8785e33ad74e35d960eb/tools/cellxgene_census_builder/src/cellxgene_census_builder/build_soma/globals.py#L212) to: ``` RNA_SEQ = [ "EFO:0003755", # FL-cDNA "EFO:0008640", # 3'T-fill "EFO:0008641", # 3’-end-seq...

# Context See [**#sci-data-eng**](https://czi-sci.slack.com/archives/C07AV4NU9D2/p1759421706893469?thread_ts=1759386018.443929&cid=C07AV4NU9D2). For cases where CELLxGENE Discover allows an organism and its descendants (_Sus scrofa and its descendants_), there was consensus for @jahilton's recommendation for modeling in a...

Draft updates to list of accepted assays and their categories

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# Pending Cleanup - [x] Inline and update [Census Accepted Assays (CSV)](https://github.com/chanzuckerberg/cellxgene-census/blob/3f50ba43fa6dcac6e4af8785e33ad74e35d960eb/docs/census_accepted_assays.csv) and [Census Accepted Assays Full Gene (CSV)](https://github.com/chanzuckerberg/cellxgene-census/blob/3f50ba43fa6dcac6e4af8785e33ad74e35d960eb/docs/census_accepted_assays_full_gene.csv) in the schema Before census builder consumes schema 7.0.0 datasets (still...