Beth Peacock
Beth Peacock
I am also having this issue - 2 out of my 11 genomes get "CMD ERROR" at that step. Not sure how to troubleshoot. The other 9 ran perfectly.
Just as an update, I was able to find more detailed errors in the file training/pasa/pasa-assembly.log for each failed directory. This helped me to troubleshoot and all ran successfully!
Thank you for the quick response! That is interesting - so when I ran train and specified "--pasa_db mysql," it said it completed successfully. When I ran it without that...
Got it - that makes sense. So I should go back to the train command and troubleshoot that CMD ERROR I was getting before? Here is the result of that...
Whoops sorry responded before I saw your last comment. One moment and I'll read it through.
Happy to give it a try - which files should I delete specifically? I have the following folders and I see PASA files in a few of them. logfiles predict_misc...
I usually just use HPC if I need more resources than my current computer has. I selected mysql primarily because the person working on this project before me did and...
Got it. I just ran the update after deleting the PASA file and got the same CMD ERROR as before, rather than the second error I got when specifying the...
I'll see if I can get it working on the HPC cluster and revisit this if it becomes the best option again. Thank you!
Yes. It says the test ran correctly (though it did have a warning — * 0:00:04.454 1M / 150M WARN General (launcher.cpp : 178) Your data seems to have high...