Bola Khalil

icon company Johnson & Johnson and Leiden University icon location Belgium icon location CompChem Scientist/PhD-candidate @johnsonandjohnson and @ULeiden NL Interested in AI-driven Drug Discovery & Cheminformatics

Results 9 comments of Bola Khalil

Cannot perform minimal update on drugbank

I get the same error. But I think it builds normally (I can see the drug nodes in the graph after the minimal update) at some point neo4j changed dealing...

[CLI]: BrokenPipeError: [Errno 32] Broken pipe

same issue here

[CLI]: BrokenPipeError: [Errno 32] Broken pipe

there is enough space. it only happens with sweeps.

[CLI]: BrokenPipeError: [Errno 32] Broken pipe

Hi guys, I think I found a temporary solution. For me it wasn't space issues. but indeed, I believe it was the fact that the processes did not stop after...

Import error can't import name 'Markup' from 'jinja2'

@Mnikley did you also update Flask before that?

cpu version instead of cu121

A temporary solution was to manually download the file from https://anaconda.org/pyg/pyg/2.5.0/download/linux-64/pyg-2.5.0-py311_torch_2.2.0_cu121.tar.bz2 then installing dependencies: `conda install aiohttp fsspec jinja2 numpy psutil pyparsing requests scikit-learn scipy tqdm` then I installed the...

cpu version instead of cu121

But I have PyTorch 2.2.0 and PyTorch-Cuda 12.1 preinstalled. I don't think it is then expected to install CPU version or am I missing something here?

cpu version instead of cu121

Hi @rusty1s I also have tried on 3 different machines like @mlodel did, and all with the same error persisting can you try with python=3.11? conda create --name test python=3.11...

Issue showing runs in the groups from mobile browsers

Hello, I just tried it again and the problem persists unfortunately.