Boas van der Putten
Boas van der Putten
As proposed in https://github.com/tseemann/abricate/issues/161, add a flag (`--identity`, only used when `--summary` flag is given) to use %IDENTITY rather than %COVERAGE in summary table. Feel free to deny PR if...
Hi there, I ran into an odd bug using CheckM today, where a no space left on device error was not caught and CheckM reported wrong output with exit code...
Stops counting SNP differences above a certain threshold (default: 9_999_999). Adds nearly negligible overhead by comparing diff to maxdiff (https://github.com/boasvdp/snp-dists/blob/master/main.c#L28). Comparison on an alignment of 500 simulated (non-masked) TB genomes...
Thank you for the extensive readme! Itried to access the Refseq genomic fasta files through `gs://metax-bakeoff-2019/refseqc/fasta/genomic.fna.gz` but received the error message: `AccessDeniedException: 403 [email protected] does not have storage.objects.list access to...
**Describe the bug** FASTQ files without move tables in the header cause a crash without a clear error message **Logging** ``` $ medaka_consensus -i test.fastq.gz -d test.fasta -o test_medaka_out -t...
From their [website](afproject.org): "AFproject is a free service for objective performance comparison of alignment-free sequence comparison tools on different datasets." It is a live benchmarking effort with 12 data sets...