Ben Daniels

Most likely missing the tool numactl

Hi Eric, The cleaning and report was done when I submitted the genome to NCBI - which gave me a report (the modified version is the one I attached above)...

This remains unresolved, I have attempted to re-run FCS_adaptor on my original genome and attempted to use the output for using TRIM on internal adaptors, but the output from FCS_adaptor...

Hi Eric, Thanks for the reply. I have attempted to do this twice now with fresh downloads of fcs.py and run_fcsadaptor.sh and am still getting the error: "Fatal error (St13runtime_error):...

The output from run_fcsadaptor.sh looks like: #accession length action range name scaffold_10000 49619 ACTION_TRIM 49595..49619 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00596.1:Evrogen Mint CDS-Gsu adapter polyT masked, contains PacBio ULI adapter subsequence scaffold_10001 49611 ACTION_TRIM 49587..49611...

Hi Eric, I had previous docker images from when I first used FCS that I needed to remove. I got fcs.py to run, but it seems to have converted all...