Stephen Blaskowski

icon company University of Washington icon location Seattle icon location Postdoctoral researcher in the Armbrust lab at the University of Washington

Results 3 issues of Stephen Blaskowski

Error: sqlite3 unable to open database file

4 comment

I've had a number of troubles getting dammit installed and working on my MacOS environment. I have miniconda3 installed and download dammit into a new environment using the following: ```...

TreeKO comparison doesn't handle adjacent duplications

1 comment

Hello, I found when calculating the TreeKO distance (`PhyloTree.compare()` method with `has_duplications=True`), the method raises an error if duplicate leaves are both children of the same parent node, but not...

`vst()` fails when using custom latent variable with `vst.flavor = "v2"`

When calling `sctransform::vst()` with a user-defined latent variable and `vst.flavor = "v2"`, the function errors with: ``` Error in fit_glmGamPoi_offset(...): !is.null(log10_umi) is not TRUE ``` This happens even when a...