blaiseli

@NHDaly Thanks to the above information, I was finally able to build an executable with `PackageCompiler.jl`, (within a singularity container) that could run on our computing cluster. Both the `cpu_target="x86_64"`...

BED has optional columns, but the first 3 should always be present and are well defined. > The first three required BED fields are: > 1. chrom - The name...

It seems that docopt completely ignores `commandArgs()`. I solved my problem by modifying the script. I decided that if the first element of the output of `commandArgs()` was a special...

Same issue for me with the snakemake workflow I'm currently writing. I never had this before, but, on the other hand, I had rarely had rules whose output was a...

For information, I found that my issue doesn't happen with snakemake version 5.7.4, and happens since at least version 5.8.2. I'm curious to know whether this is the same here.

@lassemaretty This is not really my issue: my issue was with my own workflow, and I commented here in case it could help understanding the problem, because it looked similar....

An option to convert the pdf does appear when I try to download the pdf, though.

I had code using `fs` that worked with an older install under python3.6. This code is now broken because a function from another library (`mappy`) to which I give the...

> Wrapping the file name with str solves the issue for me Well, actually there's another issue, using `str(fs.open_fs(".").open("test.fa").name)` makes `mappy.fastx_read` seemingly unable to detect the content of the file...

> This looks good in principle, any comments from our MAF experts @adamnovak , @blaiseli etc? I haven't worked with MAF files since a while, so I wouldn't consider myself...