Benjamin Reisman

icon company Johns Hopkins Medicine icon location Baltimore, MD icon location Chemical biologist who likes to code. Resident Physician-Scientist at Johns Hopkins

Results 4 comments of Benjamin Reisman

Bamfilter outputting .fa instead of .fq

I'm also running into this issue.

Render point layer as raster

Ah, this works great! I was tried for a while to get that approach to work, but couldn't figure out how to access non-exported functions. That triple colon is a...

plot_dimred error

I'm also running into this error. ``` > model_rooted % add_root(root_milestone_id = 1) > plot_dimred(model_rooted, color_cells = "pseudotime", expression_source = dataset) Pseudotime not provided, will calculate pseudotime from root milestone...

Normalization scrambles points and curves

[repex.zip](https://github.com/DoseResponse/drc/files/4303721/repex.zip) Whoops, forgot to include the data used to generate these plots.