bitcometz
bitcometz
Hello, I install the udocker package and run : ./udocker pull ncbi/pgap:2020-03-30.build4489 the URL: https://hub.docker.com/r/ncbi/pgap/tags And then: ./udocker create --name=mypgap ncbi/pgap:2020-03-30.build4489 **Error: while extracting image layer** **Error: while extracting image...
Hello, If I use cells from normal sample as reference, can I use scarches to annotate the cancer cells in the tumor sample ? Thanks !!!
Hello, I used the canu + Polish + circlator to assembly bacterial genomes. The largest contig in canu assembly is considered as 'suggestCircular'. But in the circlator : [merge circularise_details]...
Could anyone tell more details about this? This sentence is from the paper. Thanks!
hello, while I am redoing the [scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) notebooks **Fig 3**, I met some errors:    Could you help with this problem ？ Best
Hello， I want to use `ivis` to do the analysis for my scRNA-seq data. Here is my code: ```python def getReduction(X): #X = PCA(n_components=4, copy=True, random_state=1).fit_transform(X) from ivis import Ivis...
Hello， Thanks for this great software !!! But I run with some errors: `Code`: ```python magic_operator = magic.MAGIC(n_jobs=80, random_state=1) ``` `Error`: ``` --> 758 data_imputed = diff_op_t.dot(data_imputed) 760 # fast...
Hello, Thanks for this great software. Could I run scOpen with TF-IDF as inputs. For more specific, my ATAC-seq peak counts have been transformed with [TF-IDF](https://muon.readthedocs.io/en/latest/api/generated/muon.atac.pp.tfidf.html?highlight=tfidf) using the default log(TF)...
hello, I met some errors: ``` FileNotFoundError: [Errno 2] Unable to open file (unable to open file: name = '../../data/denseweight.h5', errno = 2, error message = 'No such file or...
hello, thanks for this great tool. But I met a error when using scarches to redo SageNet analysis:  Erros: ``` --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) [](https://localhost:8080/#) in...