Benjamin Istace
Benjamin Istace
Hello, same issue but on Windows 10 with Sublime Text 4 (build 4143). Things I did: - download a fresh Sublime Text install - activate it - install Package Control...
Hi, you were right, some files must have been altered and the pipeline was not correctly reinstalled. I removed entirely the folder and conda env and installed the new version....
Hello, there should be log files in the `logs` directory. Could you please upload or paste the contents of `logs/hapog_chunks_7.o`, `logs/hapog_chunks_7.e`, `logs/hapog_chunks_13.o` and `logs/hapog_chunks_13.e`?
Hi and sorry for the late answer, I was not at the office. Your log files do not report any errors, which makes me think that something exterior could have...
Hi, it is highly variable as that depends on the number of threads that you use, the size of the sequences and on the reads coverage. You can monitor the...
Hi and sorry for not responding earlier. In theory if the genome that you want to polish is heterozygous enough to chain the heterozygous snps together, you should have no...
Hi and thank you, that worked perfectly!
Hi, I've just pushed a change to the master branch with a new `--chunk-list` option that you can give to `hapog.py`. Could you please try it on your data? You...