biozhajie

Dear Professor When I try runing my dataset using phytime, I encountered an error with prompt as below: . site = 0 . invar = 0 . mixt = 1...

Hi, I have more than one thousands of sequences to be estimated a time tree using phytime, with a known sample date for each sequence. Now I want to use...

Dear Doctor, I am learning how to use phytime to estimate a time tree using a modified xml file, but run with error prompt: Encountered an issue while loading the...

How to fix the topology and branch lengthes of my input tree when estimating other parameters using RELAX

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Dear Pond, I want to fix the topology and branch lengthes of my input tree when estimating other parameters using RELAX, how to modify the input file? Thanks, Jie

How to use the k values in the table of Branch attributes at the bottom of the json output file

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Dear Professor, The k values for all branches are listed in the table of Branch attributes at the bottom of the json output file (like shown in figure below), but...

Dear professor, I am learning to use the RELAX program in HYPHY. After running the program, I got the output json file which included independent k values for each branch...

Can I setup colour range in this way in figtree

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Dear @rambaut Can I setup colour range based on an attribute values (e.g. rates) in this way: from 0 to 1, corresponding to blue to white; from 1 to 10,...

Dear @spond I have conducted a General descriptive analysis on my dataset of H1N1(pdm2009)(from the first outbreak period around 2008-2010, to early of 2020), and obtained the k distribution along...