Clio K. comments

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                                            Clio K.

Recover all sites (invariant sites) in vcf

Dear Isaac, Thank you so much for this prompt reply! We would like to merge our ddRAD obtained vcf with another vcf from WGS using aDNA. Due to the nature...

Recover all sites (invariant sites) in vcf

Dear Isaac, Could you please share with us the part of the code that would require changing/adjusting for the full vcf option and we could try to reimplement the full...

Recover all sites (invariant sites) in vcf

Thank you very much! I will keep you posted for any updates.

Problem while running LDJump command on a VCF file.

I've run on a similar problem but there's relative easy solution. Each of your SNPs needs to have a unique identifier, assuming that you have a vcf with 5 samples...