biochem_fan
biochem_fan
In case someone is having the same trouble as mine: Apparently GTK-3 (installed via Homebrew) on Mac OS X Big Sur (Mac Book Pro 2015, Intel Iris Graphics 6100) requires...
Hi, it seems that `skcuda.misc.sum` does not support arrays with more than two dimensions. For example, the following code does not work as expected. ```python # based on https://github.com/lebedov/scikit-cuda/issues/173 import...
This is because the new two-column coordinate STAR files do not have the pixel size. Thus the manual picker ends up using 1 A/px, leading to wrong low pass filtering...
As reported by Serban Ilca @serbanilca by mail on 2021 August, symmetry relaxation works only for cyclic (C_n) symmetries. In other words, it is broken for D_n, T, O and...
Initially reported in https://github.com/3dem/relion-devel/issues/24 by @rfleiro. This is currently not implemented; `Continue` will re-start the job from the beginning.
As requested by Rado Danev. 1. wait for a job in `relion_pipeliner`. 2. always make output Nodes in the GUI.
There are repeated requests for automasking. Things to consider: - How to do this robustly? - Is this really necessary? If this is for resolution estimation, we can use a...
This causes a confusing GUI behavior. FLTK's drop down list does not allow two entries with the same name. So this line https://github.com/3dem/relion/blob/master/src/gui_mainwindow.cpp#L1173 replaces an existing entry, shifting the index....
This can be trivially parallelized by MPI. We can calculate target function values per movie over MPI and gather it to the rank 0 node to run optimization.
I was using a bash script `relion_star_printtable $1 data_fsc rlnResolution rlnFourierShellCorrelation` to extract FSC from `relion_image_handler —fsc` output. If I use this on `postprocess.star`, which does not have the `rlnFourierShellCorrelation`...