Brian Long

@mattcai @kevinyamauchi @neuromusic it looks like the Travis tests are failing here because the test environment is still at python=3.6, so scikit-image is 0.15, which doesn't have the `skimage.registration` module....

@ambrosejcarr sorry if I'm being thick here, but this issue title is difficult to comprehend. The concern you referenced was that spots should be assigned to multiple regions if they're...

@ctcisar thanks for this! Making it easier to view intermediate results is super useful. I think @njmei may have also recently mentioned something like this being missing. It would also...

@ctcisar thanks for adding the tests. sorry about the delays in the CI tests- I started them up and the linter fails now. can you run that locally, make fixes...

`starfish` is currently agnostic to overlap between FOVs. Our format and FOV-centric processing allows for FOVs whose physical coordinates are not overlapping or even touching. Shouldn't this be easier to...

@dganguli isn't the cropping risky once you get into multi FOV data? it changes the shape of the FOV which would/should propagate all the way up to the image stack....

Right now it looks to me like this decoder is also a spotfinder. @ambrosejcarr how will this fit into the current structure in `starfish/core/spots`?

@dganguli I bet it will work fine for the rolony methods where the blobs are big. It may start to break down for methods with diffraction limited spots that have...

Just to chime in that it would be nice to have access to the tifffile kwargs through a dictionary. I'm currently bothered by the multiprocessing used in tifffile, so I...

@cgohlke no actual bugs, I just want to turn it off. My current use case (lots of single-plane, single-channel TIFs) benefits from some parallelization, but I'd like to manage it...