Bettina Fischer

icon company University of Cambridge icon location Research Assistant with Richard Durbin at the Department of Genetics, Cambridge University.

Results 2 issues of Bettina Fischer

error piping pair-end cram file to bwa-mem2 mem

1 comment

Hi, I'm trying to map from a pair-end cram file by piping with samtools using the following syntax (which works for bwa mem): samtools fastq -Ont reads.cram | bwa-mem2 mem...

promethion good pairs: 0

3 comment

Hi I'm using duplex_tools filter_pairs (duplex tools version: 0.3.2) on promethion created fastq files and out of 2759916 duplex pairs none are reported good. I did find the issue where...