beaferbl

Hi, I want to use the translate module directly over a list of rMATS events from some previous analyses. I am able to translate the events that are annotated, but...

Translation when there is more than one reading frame

2

Hi, I am using IRIS translate for this SE event: ENSG00000162572:SCNN1D:chr1:+:1220951:1221044:1219470:1221306 The output in the prot.fa file is the following: >chr1:1219470|1221306:uniprotFrame:+:form:skp(+)|chr1:1219470|1221306:uniprotFrame:+:form:skp(+) AATRGGSHLQlQPRRPPGRG >chr1:1219470|1220951:uniprotFrame:+:form:inc1(+)|chr1:1219470|1220951:uniprotFrame:+:form:inc1(+) AATRGGSHLQsPGPVAPQRP >chr1:1221044|1221306:uniprotFrame:+:form:inc2(+)|chr1:1221044|1221306:uniprotFrame:+:form:inc2(+) QHNAACKQGQlQPRRPPGRG In the uniprot2gtf.blastout.uniprotAll.txt I...