Adilbek Bazarkulov

Updated `create_kg2c_files.py` and now `domain_range_exclusion` now property on edges is boolean rather than string. ``` tail --bytes 1000 kg2c_lite.json_TEST xon:1040912", "primary_knowledge_source": "infores:ncbi-taxonomy", "qualified_predicate": "", "id": 281874, "domain_range_exclusion": false, "qualified_object_aspect": ""...

I've created issue #2468 summarizing our investigations with @saramsey and @sundareswarpullela regrading NGD build and specifically `curie_to_pmids.sqlite` file so far. To help us keep track of this issue.

@mohsenht `curie_to_pmids_v1.0_KG2.10.2.sqlite` was uploaded on s3 bucket `rtx-kg2-public`.

@edeutsch Thanks for suggestion, you're right after Googling the definitions of the blacklist and blocklist, it's more appropriate to use blocklist. From my understanding last commit https://github.com/RTXteam/RTX/commit/1f4d2259ec3b5cb2ecff31da6754f23819cc42ba supposed to be...

Suggested module-scope variable initialization should work, but I'm wondering whether it's necessary now. With [recent changes](https://github.com/RTXteam/RTX/commit/2935512fd640b3322f5228722e488af18ab8b1d1) in the `issue2563` branch Even if SPOKE remains in `meta_map` from older cache content,...

@saramsey I think your suggestion to black list SPOKE completely is wise, because of the inconsistency in results we get, if we leave it for consideration (if it gets back...

I verified all packages in `RTX-KG2/setup/requirements-kg2-build.txt` using: `for name in find . -name \*.py | grep -v misc-tools | grep -v archieve | grep -v neo4j; do python3 $name; done...

> And `pickle` is a built-in python package, is it not? That’s right pickle is part of Python’s standard library, so there’s no need to install it via pip

> And `graphviz` is installed via `apt-get`, I believe. `sudo apt-get install graphviz` installs system level Graphviz executables actual engine toolkit (the dot tool, etc.) `pip install graphviz` installs the...

I believe Snakemake built in DAG commands emit a `dot` file and then shell out to the dot executable (the one that we install via apt), so we might not...