baishengjun

TypeError: unsupported operand type(s) for *: 'Seq' and 'int'

1

Hi, I encounter an errror when I run hic_hiker. It is my commondline : ` hic_hiker --fasta curated.fasta --assembly curated.final.assembly --mnd merged_nodups.txt -K 20000 --refsam deltoides.final.sam ./run_hicliker` and it fails...

Why the allhic results were not consistent with my genetic linkage map?

1

Hi， I use allhic to generate the seq.HiCcorrected.fasta, then I use my genetic linkage map to group contigs. Finally, I use allhic to generate the genome. The following image shows...

Low m5C modification site number overlapped with m5c-atlas database

1

Hi, I obtained around 22,000 m5C midification sites using CHEUI-solo model, and I overlapped it with m5C-atlas database, only 1786 overlapped site obtained. I wonder how can I adjust parmeters...

antisense classification for ONT direct RNAseq data

4

Hello, First of all thank you for designing this tool. So far it has very useful on my datasets. With enable the `--sqanti_output` parameter, I obtained the SQANTI3-like format data...