b3r-prog
b3r-prog
@AlonLek its linux with a virtual env, python3 and regular pypi
Thanks @prince0310, I found the issue. its python version, has to be >=3.7
Hello Karol @Karol-G , Thanks for getting back. I am trying trying to infer on files on the fly in a production setting. While I can use nnUnetv2_predict with the...
Thanks for the reply @Karol-G. I have three followup questions. 1: To infer on raw individual files, can I do that from `nnUNetv2_predict ...` on the terminal or do I...
@Karol-G sorry for multiple pings. For q1: I am still having issues with single raw file inference. When i do nnUNetv2_predict -h the only available flags for loading files are...
@Karol-G using the brat 001 as an example, can you share how to do: 1: load and predict a single nii.gz say BRATS_514_0001.nii.gz 2: modify the below dataset.json file to...
@fedorov we just used a nifti to dcm converter library like this https://github.com/tomaroberts/nii2dcm. Our issue is overlaying the both dcms so the segmentation shows on the original image.
Thanks for the reply. Is there a way to overlay the annotation once it is converted with dcmqi with the CT/MR dcm/nifti in OHIF viewer? I cant find any documentation
@fedorov I downloaded and looked through the dcmqi library. I'm not sure it is applicable. I am trying to do the conversion to view (overlay the segmentation on the original...
Just one additional question, if i have the nifti for both the original image and the segmentation, to ensure the converted files match and show together, what tool should i...